Index

_

__author__ (in module ivneuro) __doc__ (in module ivneuro) (in module ivneuro.nex) __repr__() (ivneuro.EventPosition method) (ivneuro.nex.NexData method) (ivneuro.nex.NexData.NexData method) (ivneuro.PeriEventSpectogram method) (ivneuro.spectograms.PeriEventSpectogram method) (ivneuro.tracking.EventPosition method) __str__() (ivneuro.EventPosition method) (ivneuro.nex.NexData method) (ivneuro.nex.NexData.NexData method) (ivneuro.PeriEventSpectogram method) (ivneuro.spectograms.PeriEventSpectogram method) (ivneuro.tracking.EventPosition method) __version__ (in module ivneuro) _AddNex5VarHeaderFields() (ivneuro.nex.nexfile.NexWriter method) _BytesInContValue() (ivneuro.nex.nexfile.NexWriter method) _BytesInTimestamp() (ivneuro.nex.nexfile.NexWriter method) _CalcMarkerLength() (ivneuro.nex.nexfile.NexWriter method) _CalculateScaling() (ivneuro.nex.nexfile.NexWriter method) _centroids_of_interest (ivneuro.nex.NexData attribute) (ivneuro.nex.NexData.NexData attribute) _Chunks() (ivneuro.nex.nexfile.Reader method) _clear_Nex_data (ivneuro.nex.NexData attribute) (ivneuro.nex.NexData.NexData attribute) _continuous_of_interest (ivneuro.nex.NexData attribute) (ivneuro.nex.NexData.NexData attribute) _ConvertStringToBytesIfNeeded() (ivneuro.nex.nexfile.NexWriter method) _events_of_interest (ivneuro.nex.NexData attribute) (ivneuro.nex.NexData.NexData attribute) _FP_of_interest (ivneuro.nex.NexData attribute) (ivneuro.nex.NexData.NexData attribute) _markers_of_interest (ivneuro.nex.NexData attribute) (ivneuro.nex.NexData.NexData attribute) _MaximumTimestamp() (ivneuro.nex.nexfile.NexWriter method) _MaxOfNumpyArrayOrZero() (ivneuro.nex.nexfile.NexWriter method) _MaxValueOrZero() (ivneuro.nex.nexfile.NexWriter method) _neurons_of_interest (ivneuro.nex.NexData attribute) (ivneuro.nex.NexData.NexData attribute) _position_of_event() (ivneuro.EventPosition method) (ivneuro.tracking.EventPosition method) _pull_centroids() (ivneuro.nex.NexData method) (ivneuro.nex.NexData.NexData method) _pull_continuous() (ivneuro.nex.NexData method) (ivneuro.nex.NexData.NexData method) _pull_events() (ivneuro.nex.NexData method) (ivneuro.nex.NexData.NexData method)

_pull_fp() (ivneuro.nex.NexData method) (ivneuro.nex.NexData.NexData method) _pull_markers() (ivneuro.nex.NexData method) (ivneuro.nex.NexData.NexData method) _pull_neurons() (ivneuro.nex.NexData method) (ivneuro.nex.NexData.NexData method) _ReadAndScaleValues() (ivneuro.nex.nexfile.Reader method) _ReadAndScaleValuesUsingNumpy() (ivneuro.nex.nexfile.Reader method) _ReadContinuous() (ivneuro.nex.nexfile.Reader method) _ReadData() (ivneuro.nex.nexfile.Reader method) _ReadFileHeader() (ivneuro.nex.nexfile.Reader method) _ReadIntervals() (ivneuro.nex.nexfile.Reader method) _ReadMarker() (ivneuro.nex.nexfile.Reader method) _ReadNex5FileHeader() (ivneuro.nex.nexfile.Reader method) _ReadNex5VarHeader() (ivneuro.nex.nexfile.Reader method) _ReadPopVectors() (ivneuro.nex.nexfile.Reader method) _ReadTimestamps() (ivneuro.nex.nexfile.Reader method) _ReadVarHeader() (ivneuro.nex.nexfile.Reader method) _ReadWaveforms() (ivneuro.nex.nexfile.Reader method) _set_event_names() (ivneuro.continuous.PeriEventHistogram method) (ivneuro.PeriEventHistogram method) (ivneuro.PeriEventSpectogram method) (ivneuro.spectograms.PeriEventSpectogram method) _set_frequencies() (ivneuro.PeriEventSpectogram method) (ivneuro.spectograms.PeriEventSpectogram method) _set_timestamps() (ivneuro.continuous.PeriEventHistogram method) (ivneuro.PeriEventHistogram method) (ivneuro.PeriEventSpectogram method) (ivneuro.spectograms.PeriEventSpectogram method) _set_variable_names() (ivneuro.continuous.PeriEventHistogram method) (ivneuro.PeriEventHistogram method) (ivneuro.PeriEventSpectogram method) (ivneuro.spectograms.PeriEventSpectogram method) _SignalAbsMaxNumPy() (ivneuro.nex.nexfile.NexWriter method) _VarCount() (ivneuro.nex.nexfile.NexWriter method) _VarMaxTimestamp() (ivneuro.nex.nexfile.NexWriter method) _VarMaxTimestampNumpy() (ivneuro.nex.nexfile.NexWriter method) _VarNumDataBytes() (ivneuro.nex.nexfile.NexWriter method) _VarWriteContinuousValuesNumpy() (ivneuro.nex.nexfile.NexWriter method) _VarWriteData() (ivneuro.nex.nexfile.NexWriter method) _VarWriteTimestamps() (ivneuro.nex.nexfile.NexWriter method) _VarWriteTimestampsNumpy() (ivneuro.nex.nexfile.NexWriter method) _VarWriteWaveformsNumpy() (ivneuro.nex.nexfile.NexWriter method) _VerifyIsNumpyArray() (ivneuro.nex.nexfile.NexWriter method) _WriteContinuousVarData() (ivneuro.nex.nexfile.NexWriter method) _WriteField() (ivneuro.nex.nexfile.NexWriter method) _WriteList() (ivneuro.nex.nexfile.NexWriter method) _WriteWaveformVarData() (ivneuro.nex.nexfile.NexWriter method)

A

add_signal_to_noise() (in module ivneuro.utils) AddContVarWithMultipleFragments() (ivneuro.nex.nexfile.NexWriter method) AddContVarWithSingleFragment() (ivneuro.nex.nexfile.NexWriter method) AddEvent() (ivneuro.nex.nexfile.NexWriter method) AddIntervalVariable() (ivneuro.nex.nexfile.NexWriter method)

AddMarker() (ivneuro.nex.nexfile.NexWriter method) AddNeuron() (ivneuro.nex.nexfile.NexWriter method) AddWave() (ivneuro.nex.nexfile.NexWriter method) all_event_positions() (ivneuro.EventPosition method) (ivneuro.tracking.EventPosition method)

C

calculate_delta_coherence() (in module ivneuro.delta_coherence_core) calculate_delta_power() (in module ivneuro.delta_power_spectral_core) calculate_means() (ivneuro.continuous.PeriEventHistogram method) (ivneuro.PeriEventHistogram method) (ivneuro.PeriEventSpectogram method) (ivneuro.spectograms.PeriEventSpectogram method) calculate_sampling_period() (in module ivneuro) (in module ivneuro.continuous) calculate_sampling_rate() (in module ivneuro) (in module ivneuro.continuous)

calculate_speed() (in module ivneuro) (in module ivneuro.tracking) centroids (ivneuro.nex.NexData attribute), [1] (ivneuro.nex.NexData.NexData attribute), [1] classify_events_base_on_time() (in module ivneuro) (in module ivneuro.events) clear_fileData() (ivneuro.nex.NexData method), [1] (ivneuro.nex.NexData.NexData method), [1] continuous (ivneuro.nex.NexData attribute), [1] (ivneuro.nex.NexData.NexData attribute), [1] CONTINUOUS (ivneuro.nex.nexfile.NexFileVarType attribute)

D

data (ivneuro.nex.NexData attribute) (ivneuro.nex.NexData.NexData attribute) (ivneuro.PeriEventSpectogram attribute), [1] (ivneuro.spectograms.PeriEventSpectogram attribute), [1] DataFormat (class in ivneuro.nex.nexfile) delta_coherence() (in module ivneuro) (in module ivneuro.delta_coherence)

delta_power_spectral() (in module ivneuro) (in module ivneuro.delta_power_spectral) distances_to_event() (ivneuro.EventPosition method), [1] (ivneuro.tracking.EventPosition method), [1] distances_to_position() (in module ivneuro) (in module ivneuro.tracking)

E

estimated_position (ivneuro.EventPosition attribute), [1] (ivneuro.tracking.EventPosition attribute), [1] estimator (ivneuro.EventPosition attribute), [1] (ivneuro.tracking.EventPosition attribute), [1] EVENT (ivneuro.nex.nexfile.NexFileVarType attribute) event_names (ivneuro.continuous.PeriEventHistogram attribute), [1] (ivneuro.PeriEventHistogram attribute), [1] (ivneuro.PeriEventSpectogram attribute), [1] (ivneuro.spectograms.PeriEventSpectogram attribute), [1]

EventPosition (class in ivneuro) (class in ivneuro.tracking) events (ivneuro.EventPosition attribute), [1] (ivneuro.nex.NexData attribute), [1] (ivneuro.nex.NexData.NexData attribute), [1] (ivneuro.tracking.EventPosition attribute), [1]

F

file_path (ivneuro.nex.NexData attribute), [1] (ivneuro.nex.NexData.NexData attribute), [1] fileData (ivneuro.nex.nexfile.NexWriter attribute) (ivneuro.nex.nexfile.Reader attribute) fileHeaderKeys (ivneuro.nex.nexfile.NexWriter attribute) fileHeaderKeysToWrite (ivneuro.nex.nexfile.NexWriter attribute) FLOAT32 (ivneuro.nex.nexfile.DataFormat attribute) FLOAT64 (ivneuro.nex.nexfile.DataFormat attribute)

FP (ivneuro.nex.NexData attribute) (ivneuro.nex.NexData.NexData attribute) FP_sampling_rate (ivneuro.nex.NexData attribute) (ivneuro.nex.NexData.NexData attribute) frequencies (ivneuro.PeriEventSpectogram attribute), [1] (ivneuro.spectograms.PeriEventSpectogram attribute), [1] fromTicksToSeconds (ivneuro.nex.nexfile.NexWriter attribute) (ivneuro.nex.nexfile.Reader attribute)

G

generate_oscillatory_signal() (in module ivneuro.utils) generate_pink_noise() (in module ivneuro.utils) generate_signal() (in module ivneuro) (in module ivneuro.generate_signal)

get_event_position_std() (ivneuro.EventPosition method) (ivneuro.tracking.EventPosition method)

I

INT16 (ivneuro.nex.nexfile.DataFormat attribute) INT32 (ivneuro.nex.nexfile.DataFormat attribute) INT64 (ivneuro.nex.nexfile.DataFormat attribute) INTERVAL (ivneuro.nex.nexfile.NexFileVarType attribute) ivneuro module ivneuro.continuous module ivneuro.delta_coherence module ivneuro.delta_coherence_core module ivneuro.delta_power_spectral module ivneuro.delta_power_spectral_core module ivneuro.events module

ivneuro.generate_signal module ivneuro.nex module ivneuro.nex.NexData module ivneuro.nex.nexfile module ivneuro.nex.pull_nex_data module ivneuro.spectograms module ivneuro.spectograms_core module ivneuro.tracking module ivneuro.utils module

M

make_intervals() (in module ivneuro) (in module ivneuro.events) make_itervals_from_continuous() (in module ivneuro) (in module ivneuro.continuous) make_timestamps_Nex_cont() (in module ivneuro.nex.pull_nex_data) MARKER (ivneuro.nex.nexfile.NexFileVarType attribute) markers (ivneuro.nex.NexData attribute), [1] (ivneuro.nex.NexData.NexData attribute), [1] module ivneuro ivneuro.continuous ivneuro.delta_coherence ivneuro.delta_coherence_core ivneuro.delta_power_spectral ivneuro.delta_power_spectral_core ivneuro.events ivneuro.generate_signal ivneuro.nex ivneuro.nex.NexData ivneuro.nex.nexfile ivneuro.nex.pull_nex_data ivneuro.spectograms ivneuro.spectograms_core ivneuro.tracking ivneuro.utils

multi_coherence() (in module ivneuro.delta_coherence_core) multi_delta_power() (in module ivneuro.delta_power_spectral_core)

N

NEURON (ivneuro.nex.nexfile.NexFileVarType attribute) neurons (ivneuro.nex.NexData attribute), [1] (ivneuro.nex.NexData.NexData attribute), [1] nex5fileHeaderKeys (ivneuro.nex.nexfile.NexWriter attribute) nex5fileHeaderKeysToWrite (ivneuro.nex.nexfile.NexWriter attribute) nex5VarHeaderKeys (ivneuro.nex.nexfile.NexWriter attribute) NexData (class in ivneuro.nex) (class in ivneuro.nex.NexData)

NexFileVarType (class in ivneuro.nex.nexfile) NexWriter (class in ivneuro.nex.nexfile) normalization (ivneuro.PeriEventSpectogram attribute), [1] (ivneuro.spectograms.PeriEventSpectogram attribute), [1] normalize() (ivneuro.PeriEventSpectogram method) (ivneuro.spectograms.PeriEventSpectogram method) normalize_pes() (in module ivneuro) (in module ivneuro.spectograms) NumBytesPerItem() (ivneuro.nex.nexfile.DataFormat static method)

P

peh() (in module ivneuro) (in module ivneuro.continuous) peh_list() (in module ivneuro.continuous) peri_event_spectogram() (in module ivneuro) (in module ivneuro.spectograms) PeriEventHistogram (class in ivneuro) (class in ivneuro.continuous) PeriEventSpectogram (class in ivneuro) (class in ivneuro.spectograms) plot() (ivneuro.continuous.PeriEventHistogram method) (ivneuro.EventPosition method) (ivneuro.PeriEventHistogram method) (ivneuro.PeriEventSpectogram method) (ivneuro.spectograms.PeriEventSpectogram method) (ivneuro.tracking.EventPosition method) plot_pes() (in module ivneuro) (in module ivneuro.spectograms)

POPULATION_VECTOR (ivneuro.nex.nexfile.NexFileVarType attribute) position_of_event() (in module ivneuro) (in module ivneuro.tracking) position_std (ivneuro.EventPosition attribute), [1] (ivneuro.tracking.EventPosition attribute), [1] pull_centroids() (in module ivneuro.nex) (in module ivneuro.nex.pull_nex_data) pull_continuous() (in module ivneuro.nex) (in module ivneuro.nex.pull_nex_data) pull_events() (in module ivneuro.nex) (in module ivneuro.nex.pull_nex_data) pull_fp() (in module ivneuro.nex) (in module ivneuro.nex.pull_nex_data) pull_markers() (in module ivneuro.nex) (in module ivneuro.nex.pull_nex_data) pull_neurons() (in module ivneuro.nex) (in module ivneuro.nex.pull_nex_data)

R

Reader (class in ivneuro.nex.nexfile) reader (in module ivneuro.nex.pull_nex_data)

ReadNex5File() (ivneuro.nex.nexfile.Reader method) ReadNexFile() (ivneuro.nex.nexfile.Reader method)

S

scale_centroids() (in module ivneuro) (in module ivneuro.tracking) set_distances_to_event() (ivneuro.EventPosition method), [1] (ivneuro.tracking.EventPosition method), [1] significant_decimal_positions() (in module ivneuro.utils) single_coherence() (in module ivneuro.delta_coherence_core) single_delta_power() (in module ivneuro.delta_power_spectral_core) single_peh() (in module ivneuro.continuous) single_pes() (in module ivneuro.spectograms_core) slice_events() (ivneuro.continuous.PeriEventHistogram method) (ivneuro.PeriEventHistogram method) (ivneuro.PeriEventSpectogram method) (ivneuro.spectograms.PeriEventSpectogram method)

slice_frequencies() (ivneuro.PeriEventSpectogram method) (ivneuro.spectograms.PeriEventSpectogram method) slice_time() (ivneuro.continuous.PeriEventHistogram method) (ivneuro.PeriEventHistogram method) (ivneuro.PeriEventSpectogram method) (ivneuro.spectograms.PeriEventSpectogram method) spectogram() (in module ivneuro.spectograms_core) StructTypeFromDataType() (ivneuro.nex.nexfile.DataFormat static method)

T

theFile (ivneuro.nex.nexfile.NexWriter attribute) (ivneuro.nex.nexfile.Reader attribute) timestamps (ivneuro.continuous.PeriEventHistogram attribute), [1] (ivneuro.EventPosition attribute), [1] (ivneuro.PeriEventHistogram attribute), [1] (ivneuro.PeriEventSpectogram attribute), [1] (ivneuro.spectograms.PeriEventSpectogram attribute), [1] (ivneuro.tracking.EventPosition attribute), [1]

tsFreq (ivneuro.nex.nexfile.NexWriter attribute)

U

UINT16 (ivneuro.nex.nexfile.DataFormat attribute) UINT32 (ivneuro.nex.nexfile.DataFormat attribute)

UINT64 (ivneuro.nex.nexfile.DataFormat attribute) useNumpy (ivneuro.nex.nexfile.NexWriter attribute) (ivneuro.nex.nexfile.Reader attribute)

V

varHeaderKeys (ivneuro.nex.nexfile.NexWriter attribute) variable_names (ivneuro.continuous.PeriEventHistogram attribute), [1] (ivneuro.PeriEventHistogram attribute), [1] (ivneuro.PeriEventSpectogram attribute), [1] (ivneuro.spectograms.PeriEventSpectogram attribute), [1]

W

WAVEFORM (ivneuro.nex.nexfile.NexFileVarType attribute)

WriteNex5File() (ivneuro.nex.nexfile.NexWriter method) WriteNexFile() (ivneuro.nex.nexfile.NexWriter method)

X

x_values (ivneuro.EventPosition attribute), [1] (ivneuro.tracking.EventPosition attribute), [1]

Y

y_values (ivneuro.EventPosition attribute), [1] (ivneuro.tracking.EventPosition attribute), [1]